The evolution of age-dependent plasticity

When organisms encounter environments that are heterogeneous in time, phenotypic plasticity is often favored by selection. The degree of such plasticity can vary during an organism's lifetime, but the factors promoting differential plastic responses at different ages or life stages remain poorly understood. Here we develop and analyze an evolutionary model to investigate how environmental information is optimally collected and translated into phenotypic adjustments at different ages. We demonstrate that plasticity must often be expected to vary with age in a nonmonotonic fashion. Early in life, it is generally optimal to delay phenotypic adjustments until sufficient information has been collected about the state of the environment to warrant a costly phenotypic adjustment. Toward the end of life, phenotypic adjustments are disfavored as well because their beneficial effects can no longer be fully reaped before death. Our analysis clarifies how patterns of age-dependent plasticity are shaped by the interplay of environmental uncertainty, the accuracy of perceived information, and the costs of phenotypic adjustments with life-history determinants such as the relative strengths of fecundity and viability selection experienced by the organism over its lifetime. We conclude by comparing our results with expectations for alternative mechanisms, including developmental constraints, that promote age-dependent plasticity

Efficient Seeds Computation Revisited

The notion of the cover is a generalization of a period of a string, and there are linear time algorithms for finding the shortest cover. The seed is a more complicated generalization of periodicity, it is a cover of a superstring of a given string, and the shortest seed problem is of much higher algorithmic difficulty. The problem is not well understood, no linear time algorithm is known. In the paper we give linear time algorithms for some of its versions --- computing shortest left-seed array, longest left-seed array and checking for seeds of a given length. The algorithm for the last problem is used to compute the seed array of a string (i.e., the shortest seeds for all the prefixes of the string) in $O(n^2)$ time. We describe also a simpler alternative algorithm computing efficiently the shortest seeds. As a by-product we obtain an $O(n\log{(n/m)})$ time algorithm checking if the shortest seed has length at least $m$ and finding the corresponding seed. We also correct some important details missing in the previously known shortest-seed algorithm (Iliopoulos et al., 1996).Comment: 14 pages, accepted to CPM 201

Errors in device localization in MRI using Z-frames.

The use of a passive MRI-visible tracking frame is a common method of localizing devices in MRI space for MRI-guided procedures. One of the most common tracking frame designs found in the literature is the z-frame, as it allows six degree-of-freedom pose estimation using only a single image slice. Despite the popularity of this design, it is susceptible to errors in pose estimation due to various image distortion mechanisms in MRI. In this paper, the absolute error in using a z-frame to localize a tool in MRI is quantified over various positions of the z-frame relative to the MRI isocenter, and for various levels of static magnetic field inhomogeneity. It was found that the error increases rapidly with distance from the isocenter in both the horizontal and vertical directions, but the error is much less sensitive to position when multiple contiguous slices are used with slice-select gradient nonlinearity correction enabled, as opposed to the more common approach of only using a single image slice. In addition, the error is found to increase rapidly with an increasing level of static field inhomogeneity, even with the z-frame placed within 10 cm of the isocenter

List of New Names of Plant Pathogenic Bacteria (2008-2010)

In 2010 the International Society of Plant Pathology Committee on the Taxonomy of Plant Pathogenic Bacteria published the Comprehensive List of Names of Plant Pathogenic Bacteria, 1980-2007 to provide an authoritative register of names of plant pathogens. In this manuscript we update the list of names by cataloguing names published from 2008 to 2010. We provide those names that have been validly and effectively published in this time frame, the proposed names that we judged to be invalid and names published earlier that did not make the previous lists. We also discuss problems that arise in the naming of strains that fall into the status Candidatus and nomenclatural problems in the genus Xanthomonas

Large-eddy simulation of the lid-driven cubic cavity flow by the spectral element method

This paper presents the large-eddy simulation of the lid-driven cubic cavity flow by the spectral element method (SEM) using the dynamic model. Two spectral filtering techniques suitable for these simulations have been implemented. Numerical results for Reynolds number $\text{Re}=12'000$ are showing very good agreement with other experimental and DNS results found in the literature

Hole Dispersions for Antiferromagnetic Spin-1/2 Two-Leg Ladders by Self-Similar Continuous Unitary Transformations

The hole-doped antiferromagnetic spin-1/2 two-leg ladder is an important model system for the high-$T_c$ superconductors based on cuprates. Using the technique of self-similar continuous unitary transformations we derive effective Hamiltonians for the charge motion in these ladders. The key advantage of this technique is that it provides effective models explicitly in the thermodynamic limit. A real space restriction of the generator of the transformation allows us to explore the experimentally relevant parameter space. From the effective Hamiltonians we calculate the dispersions for single holes. Further calculations will enable the calculation of the interaction of two holes so that a handle of Cooper pair formation is within reach.Comment: 16 pages, 26 figure

List of New Names of Plant Pathogenic Bacteria (2011-2012)

The International Society of Plant Pathology Committee on the Taxonomy of Plant Pathogenic Bacteria has responsibility to evaluate the names of newly proposed pathovars for adherence to the International Standards for Naming Pathovars of Phytopathogenic Bacteria. Currently, the Comprehensive List of Names and the List of New Names of Plant Pathogenic Bacteria provide the authoritative register of names of bacterial plant pathogens. In this manuscript we up-date the list of names by cataloguing and evaluating names of plant pathogenic bacteria published in 2011 and 2012. We provide those names that have been validly and effectively published in this time frame, the proposed names that we judged to be invalid, and names published earlier that did not make the previous lists

Effective nonlinear optical properties of composite media of graded spherical particles

We have developed a nonlinear differential effective dipole approximation (NDEDA), in an attempt to investigate the effective linear and third-order nonlinear susceptibility of composite media in which graded spherical inclusions with weak nonlinearity are randomly embedded in a linear host medium. Alternatively, based on a first-principles approach, we derived exactly the linear local field inside the graded particles having power-law dielectric gradation profiles. As a result, we obtain also the effective linear dielectric constant and third-order nonlinear susceptibility. Excellent agreement between the two methods is numerically demonstrated. As an application, we apply the NDEDA to investigate the surface plasma resonant effect on the optical absorption, optical nonlinearity enhancement, and figure of merit of metal-dielectric composites. It is found that the presence of gradation in metal particles yields a broad resonant band in the optical region, and further enhances the figure of merit.Comment: 20 pages, 5 figure

Cluster Spin Glass Distribution Functions in La2−x_{2-x}Srx_xCuO4_4

Signatures of the cluster spin glass have been found in a variety of experiments, with an effective onset temperature $T_{on}$ that is frequency dependent. We reanalyze the experimental results and find that they are characterized by a distribution of activation energies, with a nonzero glass transition temperature $T_g(x)<T_{on}$. While the distribution of activation energies is the same, the distribution of weights depends on the process. Remarkably, the weights are essentially doping independent.Comment: 5 pages, 5 ps figure

The one dimensional Hydrogen atom revisited

The one dimensional Schroedinger hydrogen atom is an interesting mathematical and physical problem to study bound states, eigenfunctions and quantum degeneracy issues. This 1D physical system gave rise to some intriguing controversy over more than four decades. Presently, still no definite consensus seems to have been reached. We reanalyzed this apparently controversial problem, approaching it from a Fourier transform representation method combined with some fundamental (basic) ideas found in self-adjoint extensions of symmetric operators. In disagreement with some previous claims, we found that the complete Balmer energy spectrum is obtained together with an odd parity set of eigenfunctions. Closed form solutions in both coordinate and momentum spaces were obtained. No twofold degeneracy was observed as predicted by the degeneracy theorem in one dimension, though it does not necessarily have to hold for potentials with singularities. No ground state with infinite energy exists since the corresponding eigenfunction does not satisfy the Schroedinger equation at the origin.Comment: Accepted for publication in the Canadian Journal of Physics, July 28th, 200